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SmartTable |
Description |
Organism |
Type |
Size |
Owner |
Update Time |
|---|
| 1 | STELLA - Table for Patient-Score Matrix | STELLA algorithm example table
https://github.com/ComplexityBiosystems/STELLA/blob/main/2_CreateTable_Metacyc.R
| MetaCyc
| pathways
| 3388
| Matteo Tajana | Yesterday 01:29 am |
| 2 | Copy of Drug-efflux transporters represented in EcoCyc and their reactions | Efflux pump genes and their regulators in E. coli K-12
| Escherichia coli K-12 substr. MG1655
| proteins
| 25
| Danna Gifford | Fri May 20 2022 08:59 am |
| 3 | Copy of All transporters of E. coli K-12 substr. MG1655 | Transporter genes and their regulators in E. coli K-12
| Escherichia coli K-12 substr. MG1655
| proteins
| 480
| Danna Gifford | Tue May 17 2022 07:23 am |
| 4 | MetaCyc Pathway Classes |
| MetaCyc
| pathways
| 674
| Suzanne Paley | Wed May 11 2022 09:51 am |
| 5 | Curated transcription factor binding regulatory interactions in BsubCyc |
| Bacillus subtilis subtilis 168
| regulation
| 169
| Suzanne Paley | Mon May 09 2022 10:26 am |
| 6 | Genes in transcription unit from Curated transcription factor binding regulatory interactions |
| Bacillus subtilis subtilis 168
| all-genes
| 331
| Suzanne Paley | Mon May 09 2022 10:17 am |
| 7 | E. coli transcription factor DNA-binding region sequences |
| Escherichia coli K-12 substr. MG1655
| all-genes
| 203
| Suzanne Paley | Wed Apr 20 2022 05:06 pm |
| 8 | Km Kcat enzymes of E. coli K-12 substr. MG1655 |
| Escherichia coli K-12 substr. MG1655
| proteins
| 1425
| Yang Yu | Sat Mar 26 2022 03:21 pm |
| 9 | Km Kcat All enzymes of B. subtilis subtilis 168 |
| Bacillus subtilis subtilis 168
| proteins
| 997
| Yang Yu | Fri Mar 11 2022 07:05 pm |
| 10 | All transcription units of E. coli K-12 substr. MG1655 with promoter and terminator coords |
| Escherichia coli K-12 substr. MG1655
| transcription-units
| 3697
| Suzanne Paley | Thu Feb 24 2022 06:50 pm |
| 11 | Multi-cause, multi-confounder front-door motif | Causes-> Mediator->Effects<-Regulators->Causes
| Escherichia coli K-12 substr. MG1655
| all-genes
| 1945
| Jeremy Zucker | Fri Feb 18 2022 11:54 am |
| 12 | all attenuators, cryptic prophages, mRNA binding sites, origin of replication, extragenic sites, ph |
| Escherichia coli K-12 substr. MG1655
| mrna-binding-sites, dna-segments, extragenic-sites, dna-binding-sites, transcription-units, terminators, promoters
| 13228
| Carl Stone | Tue Jan 11 2022 12:24 am |
| 13 | Hall Study humann3 pathways |
| MetaCyc
| string
| 320
| Poorani Subramanian | Thu Jan 06 2022 10:25 am |
| 14 | Genes regulated by RpoS and RpoD | To get a list of all genes regulated by sigma S: From rpoS, I added a transform to the gene product. Selected the gene product column and added the property Recognized-Promoters. Selected that column and added the transform "transcription units of promoter". Selected that column and added the transform "Genes of transcription unit". I then added a new row, entered rpoD (selected "rpoD (All Genes)" from autocomplete options), and all its other columns were filled in automatically.
| Escherichia coli K-12 substr. MG1655
| all-genes
| 2
| Suzanne Paley | Tue Dec 21 2021 10:45 am |
| 15 | 48 pp sars, Bannerman et al 2021 |
| Homo sapiens
| pathways, all-genes
| 49
| Bridget Bannerman | Sat Dec 04 2021 09:56 am |
| 16 | Second Napkin problem (with two or more confounders) | W->R->X->Y<-V->W<-U->X
| Escherichia coli K-12 substr. MG1655
| all-genes
| 911
| Jeremy Zucker | Fri Oct 29 2021 03:05 pm |
| 17 | All instances of Genes in Saccharomyces cerevisiae S288c |
| Saccharomyces cerevisiae S288c
| all-genes
| 6374
| Roland Barriot | Thu Oct 14 2021 08:22 pm |
| 18 | All instances of Pathways in Mycobacterium tuberculosis H37Rv |
| Mycobacterium tuberculosis H37Rv
| pathways
| 287
| Roland Barriot | Thu Oct 14 2021 01:36 pm |
| 19 | All instances of Genes in Mycobacterium tuberculosis H37Rv |
| Mycobacterium tuberculosis H37Rv
| all-genes
| 4072
| Roland Barriot | Thu Oct 14 2021 01:35 pm |
| 20 | All instances of Genes in Bacillus subtilis subtilis 168 |
| Bacillus subtilis subtilis 168
| all-genes
| 4461
| Roland Barriot | Thu Oct 14 2021 01:32 pm |
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